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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1281640_1282131_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1281640 - 1282131
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGAATTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGATTCTGAATT
Flanking Amino Acid:
SRTGFNTLTVDTDEIQVNYP
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.4
0.55
1
70.7
44
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
62.2
0.46
1.4
72.9
37.7

Associated Gene:

Gene:
NDUFAF5
Ensembl Gene ID:
ENSAPLG00000012410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012918
1277414 - 1283942
6529