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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1282193_1283228_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1282193 - 1283228
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
AACATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
GLFEIMEDLQGMGESNCSWN
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
93.2
21.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
67.3
0.39
1
63.2
42.2
Minor 5ss
29
-2.4
3.8
41.8
44.8
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
NDUFAF5
Ensembl Gene ID:
ENSAPLG00000012410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012918
1277414 - 1283942
6529