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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12822620_12822810_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12822620 - 12822810
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCCTTTTATC
Flanking Amino Acid:
HFQKKKKLQQMLKCYFEVWI
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.7
0.83
0.7
81.5
29.2
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
57.8
0.23
1.6
67.57
38.5

Associated Gene:

Gene:
CST7
Ensembl Gene ID:
ENSAPLG00000003056
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003088
12822542 - 12825594
3053