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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12822928_12823239_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12822928 - 12823239
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTTACTTTAAAG
Flanking Amino Acid:
EWQINKAMVQIVRGLKYMLH
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
76.8
0.6
0.8
69.5
36.8
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
62.7
0.26
1.6
65.19
42.6

Associated Gene:

Gene:
CST7
Ensembl Gene ID:
ENSAPLG00000003056
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003088
12822542 - 12825594
3053