About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1283313_1283636_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1283313 - 1283636
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
ACCTTCCCACTT
Flanking Amino Acid:
TMLAAAAIYREMYGNSDGTV
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
69.7
0.44
1
65.1
36.3
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
41.2
-0.5
1.9
54.17
42.2

Associated Gene:

Gene:
NDUFAF5
Ensembl Gene ID:
ENSAPLG00000012410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012918
1277414 - 1283942
6529