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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1283720_1283855_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1283720 - 1283855
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTTTTACTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTC
Flanking Amino Acid:
MIGWKFHESQAKPAQRGSAT
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.1
0.74
0.7
82.3
28.3
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
67
0.51
1.5
77
33.7

Associated Gene:

Gene:
NDUFAF5
Ensembl Gene ID:
ENSAPLG00000012410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012918
1277414 - 1283942
6529