Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12854154_12864539_F

Intron Information:

Intron Rank:

134910

Intron Class:

major

Intron Phase:

Intron Coordinates:

12854154 - 12864539

Intron Length:

10386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTATG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTGGAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATGAC

U12 Branch Point Sequence:

TTCTTCTGGAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

0.42

1.1

57.7

Major PPT

68.9

0.43

1.1

65.9

39.6

Minor 5ss

-1.4

3.1

50.1

46.4

Minor BPS

51.1

0.02

1.8

65.58

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022570

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034702

12853611 - 12865740

12130