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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12873300_12873378_F

Intron Information:

Intron Rank:
134905
Intron Class:
major
Intron Phase:
Intron Coordinates:
12873300 - 12873378
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCAGCAGTAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
40.5
-0.7
2.3
52.03
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022570
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020556
12854082 - 12873676
19595