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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12891588_12892306_F

Intron Information:

Intron Rank:
134907
Intron Class:
major
Intron Phase:
Intron Coordinates:
12891588 - 12892306
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ACATTCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
81.6
0.71
0.7
79.6
25.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
45.9
-0.2
1.8
61.75
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022570
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024660
12853611 - 12896359
42749