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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12897052_12939916_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12897052 - 12939916
Intron Length:
42865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
GTGTATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTTGTGTATCT
Flanking Amino Acid:
GIAAFYLSHETNKAVAKGDF
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
76.7
0.6
1
69.8
41.2
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
45.3
-0.2
2.5
71.96
45.3

Associated Gene:

Gene:
SYNDIG1
Ensembl Gene ID:
ENSAPLG00000002971
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002998
12896893 - 12950786
53894