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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13082845_13083969_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13082845 - 13083969
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GAACTGATAATT
Flanking Amino Acid:
ALHDTPEMAKHTTCNFVVYS
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.5
0.55
0.7
73
25.2
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
42.5
-0.4
2.1
57.11
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002886
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002925
13082767 - 13084683
1917