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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13083403_13083969_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13083403 - 13083969
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TGCTATTTAAGC
Flanking Amino Acid:
ALHDTPEMAKVRALIYLPYF
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
86.6
0.82
0.7
85.5
29.1
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
53.6
0.09
1.8
63.59
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002886
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047371
13082792 - 13084683
1892