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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13129290_13129504_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13129290 - 13129504
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTGG
5'SS Class:
major
3'SS Sequence:
TACTCCCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTC
Flanking Amino Acid:
SGTEEAQHLKERLEKEKKLT
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
58.6
43
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
67.7
0.4
0.9
62.4
34.2
Minor 5ss
37.9
-1.4
3
47.4
48
Minor BPS
60.1
0.3
1.6
68.66
38.1

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606