About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13129932_13131631_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13129932 - 13131631
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTCTTCTGGACA
Flanking Amino Acid:
TQKQSQELALLKTQLEQNEA
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79.1
0.65
0.8
73.8
30.1
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
58.5
0.26
1.5
66.22
40.5

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606