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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13131716_13132022_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13131716 - 13132022
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCCCCCGGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTTTCTTTCTGT
Flanking Amino Acid:
RQNYTKEVEVLRQLLSESQE
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
66.9
40.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
60.1
0.23
1
53.4
36.6
Minor 5ss
35.5
-1.6
3.2
45.6
36.6
Minor BPS
40
-0.6
3.6
71.96
45.3

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606