Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13133798_13133897_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13133798 - 13133897

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CCTCCCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TTTTTCTCCATC

Flanking Amino Acid:

KQHTSTTEPADSALKLKEAE

Intron Amino Acid Position:

703

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

74.1

31.6

Major BPS

0.5

1.1

71.2

35.2

Major PPT

80.2

0.68

0.7

76.6

25.4

Minor 5ss

-2.6

31.7

42.6

Minor BPS

56.1

0.17

73.85

37.6

Associated Gene:

Gene:

RRBP1

Ensembl Gene ID:

ENSAPLG00000000581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000987

13128752 - 13143357

14606