About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13133979_13134089_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13133979 - 13134089
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
TTTTCACGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTTTTTTCACG
Flanking Amino Acid:
LPQVTVSSQQDYDTWLQEFK
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.1
0.54
0.9
66.5
39.7
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
52.1
-0
1.8
57.56
45

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606