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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13136694_13138924_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13136694 - 13138924
Intron Length:
2231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGCAG
5'SS Class:
major
3'SS Sequence:
TCCCCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TGCTGTTTAAAG
Flanking Amino Acid:
ASEKQLEQLQASQREVEATL
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.3
60.5
45.8
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
73.4
0.53
0.9
68.1
32
Minor 5ss
25.5
-2.8
3
29.5
43.2
Minor BPS
49.9
-0.1
1.9
56.87
44.7

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606