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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13140952_13141210_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13140952 - 13141210
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CTCACGCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGGGCCTCACTG
Flanking Amino Acid:
AGIVQDTWHTATQKGDPVTV
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
59.8
42.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
68.1
0.41
0.9
60.8
35
Minor 5ss
34.4
-1.8
3.7
50.7
46
Minor BPS
44.8
-0.5
1.9
47.85
45.8

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606