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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13141360_13142672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13141360 - 13142672
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATAAC
U12 Branch Point Sequence:
GTGGTCCCAGCT
Flanking Amino Acid:
KAASKKKAEPAPADADGPLY
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
53
0.08
1.1
55.6
36
Major PPT
71.6
0.49
0.9
76
26.5
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
40.9
-0.6
2
57.28
45.2

Associated Gene:

Gene:
RRBP1
Ensembl Gene ID:
ENSAPLG00000000581
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000987
13128752 - 13143357
14606