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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13183639_13184635_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13183639 - 13184635
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATCTGAAACT
Flanking Amino Acid:
MAELEIKHAKNNVSLLQSCI
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
88.4
0.86
0.7
80.6
31.4
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
48.9
-0
2.3
71.91
45.4

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990