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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13185604_13186674_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13185604 - 13186674
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTGCATTATTC
Flanking Amino Acid:
YYMLNIEAAKDLLYRRTRAL
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79.7
0.67
0.9
70.3
40.3
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
54.5
0.12
2
71.26
40.4

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990