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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13186762_13186847_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13186762 - 13186847
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTACATACAA
Flanking Amino Acid:
KVAELFEKLRKVESRVSSDE
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82.7
0.74
0.8
77.3
30.7
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
46.1
-0.3
2.1
63.86
41.6

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990