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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13187984_13188832_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13187984 - 13188832
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
ACTGACTTAACA
Flanking Amino Acid:
ADEVLFSGVKEVDDFFEQEK
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
83.7
0.76
0.8
81
30.6
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
64.1
0.44
1.6
70.63
41.5

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990