About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13188929_13189539_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13188929 - 13189539
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGACTTTGAAGC
Flanking Amino Acid:
FHVFLEYDQDLSVRRKNTKE
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
77.4
0.62
0.8
69.9
35.2
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
46.4
-0.2
1.7
53.91
37.5

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990