About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13189664_13190029_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13189664 - 13190029
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
TAGTACAGAAGG
Flanking Amino Acid:
EFAKMKQELEAEYLAVFKKT
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.9
43.8
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
36
-1.6
2.7
37.9
40
Minor BPS
41.5
-0.7
2.1
47.76
44.6

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990