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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13190152_13190606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13190152 - 13190606
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
ATTCCTTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTATCACTAACC
Flanking Amino Acid:
TETEEYAGLIIPPAPSKPDF
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
68.6
0.42
0.9
62
39.2
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
55.1
0.14
2
69.55
41.2

Associated Gene:

Gene:
SNX5
Ensembl Gene ID:
ENSAPLG00000016284
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017006
13183591 - 13197580
13990