Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13202088_13202614_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13202088 - 13202614

Intron Length:

527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

GCATCTTTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATCAT

U12 Branch Point Sequence:

AGTGTCTAAAAC

Flanking Amino Acid:

GKDGFAEYTKNLFLQGELFH

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

70.5

0.51

1.3

41.2

Major PPT

0.47

0.9

69.2

36.7

Minor 5ss

40.5

-1.1

Minor BPS

48.1

-0.1

1.8

58.15

40.6

Associated Gene:

Gene:

MGME1

Ensembl Gene ID:

ENSAPLG00000016203

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021179

13200132 - 13204748

4617

ENSAPLT00000016906

13198551 - 13204748

6198