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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13209560_13211876_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13209560 - 13211876
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TTTCATGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTTTTCATG
Flanking Amino Acid:
DLKRHVRTHTGIRPYKCEVC
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.5
40.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.9
73.4
36.7
Minor 5ss
42.2
-0.9
3
52.3
45.8
Minor BPS
48.6
-0.2
1.8
56.54
39.7

Associated Gene:

Gene:
OVOL2
Ensembl Gene ID:
ENSAPLG00000016199
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025174
13209249 - 13215043
5795
ENSAPLT00000016898
13209249 - 13215043
5795
ENSAPLT00000042564
13208967 - 13215043
6077
ENSAPLT00000040216
13209249 - 13215043
5795