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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13212067_13214186_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13212067 - 13214186
Intron Length:
2120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAGC
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
GTCGATACAACT
Flanking Amino Acid:
KRPVVRSKIKFTTGTCNDAT
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
67.1
44.6
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
79.9
0.67
0.7
72.6
32.1
Minor 5ss
45.3
-0.5
2.7
61.2
43.3
Minor BPS
42.2
-0.5
1.9
58.75
44.1

Associated Gene:

Gene:
OVOL2
Ensembl Gene ID:
ENSAPLG00000016199
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040216
13209249 - 13215043
5795