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Intron Name: Anas_platyrhynchos_platyrhynchos_3_13224294_13227719_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13224294 - 13227719

Intron Length:

3426

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

CTGTGATGAACC

Flanking Amino Acid:

VHVQQRREQERLHRGVLRDL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

84.4

0.77

0.9

81.2

36.5

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

46.8

-0.2

2.1

60.22

44.7

Associated Gene:

Gene:

PET117

Ensembl Gene ID:

ENSAPLG00000029005

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036218

13224198 - 13227869

3672