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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13236421_13236645_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13236421 - 13236645
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGACCTGGACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CACTCTTTGACC
Flanking Amino Acid:
DPEESNASLQVVNAALLLVD
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
54.9
0.11
1.1
47.2
44.6
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
66.3
0.49
1.3
65.97
40.4

Associated Gene:

Gene:
KAT14
Ensembl Gene ID:
ENSAPLG00000016172
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042753
13226536 - 13248593
22058