About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13236778_13237308_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13236778 - 13237308
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATGT
Flanking Amino Acid:
QDFRILDRYQTMLPAMKGYR
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
84.7
0.78
0.9
80.4
36.6
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
60.5
0.41
2
84.91
41.5

Associated Gene:

Gene:
KAT14
Ensembl Gene ID:
ENSAPLG00000016172
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042753
13226536 - 13248593
22058
ENSAPLT00000016874
13227720 - 13244107
16388