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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13248787_13249007_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13248787 - 13249007
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
EGEECVRALLRCNASIKKKN
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.4
0.89
0.7
84.1
29.7
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
DZANK1
Ensembl Gene ID:
ENSAPLG00000005843
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040709
13248195 - 13269215
21021
ENSAPLT00000006061
13248621 - 13268475
19855