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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13250086_13253470_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13250086 - 13253470
Intron Length:
3385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
TGTGCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
TGTGCTTCCACA
Flanking Amino Acid:
TLNYALASNKPESRQLLEEL
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
75.1
0.56
0.9
68.7
37.3
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
48
-0.1
2.1
63.91
42.7

Associated Gene:

Gene:
DZANK1
Ensembl Gene ID:
ENSAPLG00000005843
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006061
13248621 - 13268475
19855