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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13251298_13252457_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13251298 - 13252457
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CGACTTTGAATT
Flanking Amino Acid:
DDLDGSQTSFGKEDHDLSHS
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
73.8
30.9
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
70.8
0.47
0.9
68.6
31.8
Minor 5ss
37.2
-1.4
3.2
47.6
42.6
Minor BPS
48.7
-0
1.4
59.3
38.2

Associated Gene:

Gene:
DZANK1
Ensembl Gene ID:
ENSAPLG00000005843
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040709
13248195 - 13269215
21021