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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13252555_13253470_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13252555 - 13253470
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
GATGATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATGATCC
Flanking Amino Acid:
TLNYALASNKDIHTSKPVKF
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
67.7
0.4
1
58.4
42.6
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
46.5
-0.2
2.3
68.6
42.6

Associated Gene:

Gene:
DZANK1
Ensembl Gene ID:
ENSAPLG00000005843
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040709
13248195 - 13269215
21021