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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13264244_13264795_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13264244 - 13264795
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATTAGCTAATT
Flanking Amino Acid:
ISALPTESLQFATSSVVTSR
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.9
76.1
39.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.6
0.8
0.8
83.6
31.5
Minor 5ss
28.4
-2.5
3.8
40
45.7
Minor BPS
44.7
-0.3
2.4
66.73
43.9

Associated Gene:

Gene:
DZANK1
Ensembl Gene ID:
ENSAPLG00000005843
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040709
13248195 - 13269215
21021
ENSAPLT00000006061
13248621 - 13268475
19855