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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13271393_13272387_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13271393 - 13272387
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTACTTTACA
Flanking Amino Acid:
LYRIKESQNASKMKGSDNQE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.81
0.8
79.9
31.8
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
64
0.44
1.9
76.57
40.2

Associated Gene:

Gene:
POLR3F
Ensembl Gene ID:
ENSAPLG00000005533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005754
13269776 - 13276527
6752