Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13272456_13273222_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13272456 - 13273222

Intron Length:

767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTTCAA

5'SS Class:

major

3'SS Sequence:

TGTTTTTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TGTTTTTAAACA

Flanking Amino Acid:

YQIIEDAGNKGIWSRDIRYK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

40.2

Major BPS

87.3

0.93

0.8

36.5

Major PPT

76.9

0.61

74.1

39.5

Minor 5ss

32.2

-2

3.1

40.8

45.4

Minor BPS

65.1

0.47

1.6

75.16

36.6

Associated Gene:

Gene:

POLR3F

Ensembl Gene ID:

ENSAPLG00000005533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005754

13269776 - 13276527

6752