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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13273951_13274010_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13273951 - 13274010
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTACATG
5'SS Class:
major
3'SS Sequence:
GGGCCTGGTACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CGCTCAGTGACT
Flanking Amino Acid:
ALFSNRHPKRSDQDFESEFV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1
63.8
42
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
57.1
0.16
1.1
48.9
43.9
Minor 5ss
43
-0.8
2.9
56.4
48
Minor BPS
46.2
-0.2
2.3
64.81
45.7

Associated Gene:

Gene:
POLR3F
Ensembl Gene ID:
ENSAPLG00000005533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005754
13269776 - 13276527
6752