About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13274081_13274823_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13274081 - 13274823
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTGATGAGAAAT
Flanking Amino Acid:
QQCFKFLQSKAEAARESKQN
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.8
0.9
0.6
89.3
19.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
36.2
-0.9
2.2
51.25
42.7

Associated Gene:

Gene:
POLR3F
Ensembl Gene ID:
ENSAPLG00000005533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005754
13269776 - 13276527
6752