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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13274932_13275649_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13274932 - 13275649
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAACA
5'SS Class:
major
3'SS Sequence:
TACTGTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTTACT
Flanking Amino Acid:
KYICELGISKVELSMEDIET
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.3
74.4
36
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.6
0.55
0.8
73
37
Minor 5ss
29.2
-2.4
2.6
33.3
41.3
Minor BPS
63.2
0.5
1.8
83.36
37.2

Associated Gene:

Gene:
POLR3F
Ensembl Gene ID:
ENSAPLG00000005533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005754
13269776 - 13276527
6752