Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13275842_13276449_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13275842 - 13276449

Intron Length:

608

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

AATTACTCCACT

Flanking Amino Acid:

LVRTPCGLCPVFDDCHEGGE

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

81.8

31.8

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

86.8

0.83

0.7

80.1

31.9

Minor 5ss

36.5

-1.5

2.7

46.6

41.8

Minor BPS

49.1

0.01

2.2

73.38

42.8

Associated Gene:

Gene:

POLR3F

Ensembl Gene ID:

ENSAPLG00000005533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005754

13269776 - 13276527

6752