About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13281239_13282252_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13281239 - 13282252
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
CTTTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTACTAATGT
Flanking Amino Acid:
PTCKAVLNPLCQVDYRAKLW
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
63.7
41.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.9
0.83
0.7
81.5
23.5
Minor 5ss
32.1
-2
3.4
40.7
40.7
Minor BPS
45.1
-0.2
2.3
68.37
48.2

Associated Gene:

Gene:
SEC23B
Ensembl Gene ID:
ENSAPLG00000004406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027025
13280477 - 13294874
14398
ENSAPLT00000004619
13280477 - 13295622
15146