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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13290714_13290997_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13290714 - 13290997
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTCTTCTTACTC
Flanking Amino Acid:
LSESFSLYPQFMFHLRRSPF
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.3
0.79
0.8
80.2
31.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
58.4
0.24
1.6
64.76
42

Associated Gene:

Gene:
SEC23B
Ensembl Gene ID:
ENSAPLG00000004406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027025
13280477 - 13294874
14398
ENSAPLT00000004619
13280477 - 13295622
15146