About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13291160_13291953_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13291160 - 13291953
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
AGTGACTGACCT
Flanking Amino Acid:
YAYSFHGPPEPVLLDSSSIL
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
46.1
-0.2
2
65.25
44.6

Associated Gene:

Gene:
SEC23B
Ensembl Gene ID:
ENSAPLG00000004406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027025
13280477 - 13294874
14398
ENSAPLT00000004619
13280477 - 13295622
15146