About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13292041_13293465_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13292041 - 13293465
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ACATCTCTACCA
Flanking Amino Acid:
FFQIVIYLGETIAQWQKAGY
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
65.8
0.35
0.9
61.5
33.7
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
48
-0.1
1.9
58.96
40.9

Associated Gene:

Gene:
SEC23B
Ensembl Gene ID:
ENSAPLG00000004406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027025
13280477 - 13294874
14398
ENSAPLT00000004619
13280477 - 13295622
15146