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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13303198_13304065_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13303198 - 13304065
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGG
5'SS Class:
major
3'SS Sequence:
TCCTCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGCATTTAATC
Flanking Amino Acid:
VQRVAQASVTVGGEQISSIG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
67.1
44.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.5
0.57
0.7
69
31.5
Minor 5ss
27.5
-2.6
2.9
32.4
42.2
Minor BPS
56.8
0.19
1.5
63.05
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004371
13302904 - 13321556
18653