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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13304157_13306394_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13304157 - 13306394
Intron Length:
2238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AATTTTGTAAAT
Flanking Amino Acid:
LEDTQRELEHMVRKILNLRV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
50.2
0.08
2
72.15
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004371
13302904 - 13321556
18653